YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157107523, gi...
Protein type:	Transmembrane
Type Confidence:	0.55
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRITIAFTVA LSHPLKYPNT GPESHRELFC ETISGPYLLL LVYCSFEKYI RKRGLQKAVT  60
   61 VPELSTINKL KIFCTRSRMK GNLFISFLLA VTISHYIVST APVGKCPDIF DSNHLVFLPH 120
  121 EDCTKFYLCG HNGPVEKQCP SGLHWNSQAS VCDWPELAGC SGGSSVPPTV TVTPEPVSTT 180
  181 TAPAATTSAP PSSTVAPTNK CPEFFNPDHV SFIPHADCSK FYVCTQEGPV EKSCPSGLHW 240
  241 NQQGSICDWP EVAGCVASAS IPPKDRETVG QCPELYDPEN EVFLADASDC SKYYLCTWGG 300
  301 IPVLLNCPAG LHWNKNTNQC DWPAQAGCAQ FDRDLGFKHS KSIENLVLES I

Type	Start	End	Confidence
Cytoplasmic	1	80	0.52
Transmembrane Helix	81	98	0.51
Non-Cytoplasmic	99	351	0.99