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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|108879336, gi...
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLLSGIRTR LLICIFRPDI IFSHQKAQFP TDSNVRLYFL LPFVSAQLRT PRITEHPSDV  60
   61 LVPKNDPVTL NCKAEGKPEP EIRWYKDGEP VKFTPNHVLL PSGSLFFLRT VHSKKEQDGG 120
  121 VYWCVASNAA GTVNSRNATL QIAVLRDEFR VEPKDTRVAA GETALLECGA PKGNPEPTIS 180
  181 WRKDEIMLEL DDFRPASASG KEPARVRIVD GGNLLISDVR PTDEGRYQCI AQNMVGSRES 240
  241 GSGKLTVQVK PYFINEPTDI TVLVGQRVQF QCTVGGDPHP QILWKKENGH IPVGRAEILE 300
  301 EDRSLVIKNV AQDDQGIYIC EAHNSVGQIN AKAQLVVNSS PTFIIKPQDQ RTNLNGVATF 360
  361 KCTASGNPPP SVFWTKEGSQ TLMFPNNTYG NIHISSQGSL QVRGAQKEDD GYFVCSALSV 420
  421 AGSTTSRAYL QVTSSFDSSP PPVLQEVPSN LTLPRGSIAM LPCRGSGPTS PKIYWKKNAT 480
  481 DITALGPRFS IVQGGTLKID DIQPEDSGWY SCVAYSEKGE TSWSAFLQVE KNLSTMLPRS 540
  541 GSPELLPVAP SIPKAVNITN SNVTLMWTKI GGGGEDSLQE KLWNNPVSGY LVEYYSPDEK 600
  601 KGWIRAIRVP GNTATITNLS PSTSYIFVVR AENAYGYSAP SPLSNLIRTL SADDGVTMPE 660
  661 ELEAARMVLN GKILELVDAV AISSTSVRLE WQLHISSTEE YIEGLYVRYR DLGANSQKYS 720
  721 MLTIPNNAAE MHVITNLDKF TRYEFFLTPF FKNVEGQPSN SKVVQTAEDA PTAAPVNIQT 780
  781 GMLNLTAGWV KWSPPPAEHQ NGVLLGYKIQ VKAGNSSKTL ASMTLNSTTT SVMLNNLTTG 840
  841 ATYRAQIVAF NRVGAGPYSK PAYLIMDPAH VIAPPRAHNS LSDIGGYRHH NFMHETWFMV 900
  901 FVVLALLIIL TFTVVGVVVF IKKRQNMSKA MVTVPVITSG DLASLNLTRK DCLWIDRGWR 960
  961 STDTDKDSGL SEMKLLESSQ NPSNYTDVGT DYAEVDPRNI VSFYNCRKSP DNPSPYATTM1020
 1021 IMNGHPNQNG HEAYSSANSS LRSDIPYGPG HPKPFAMPYS TAPSNWIDFL PPPPEHPPPI1080
 1081 PQALDHHLHL NHVYPSELIG TSSSQGSRCG SGLSTSYNAH HSYQYVDPSL LGRGSRSSSN1140
 1141 ELRSPPTSQP PQPPTHLYLP HPPHSASSLT NGSNPSEVYF NDDIYNSPLF KDSLMVFDMI1200
 1201 HTKNSSRQRH VLTETILRHF NEFLSNLLEN S

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle