YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157109110, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTIEKNEY PKASNALVAG AILSYIASIF LMMSFCSPYW IESYDESFSQ FKNMGLWEYC  60
   61 FKDFSYPYYQ FPKLFNGCHH IFSEEYYVIR EYLLPGWLMV VQALVTLSFM CTFGSLVIMA 120
  121 CELVRWPLKM VLRYEWMLTS ISFVGIGSSS LFMFLAVAIF GGNAYRRDWL MYPKFNVLSW 180
  181 SYALAVVSFM ILALAALLLY KEAKKSYELR REAKNLVMQM QMQEPGYHPS HHTSRSLHSG 240
  241 GYI

Type	Start	End	Confidence
Cytoplasmic	1	15	0.94
Transmembrane Helix	16	41	0.82
Non-Cytoplasmic	42	99	0.97
Transmembrane Helix	100	121	0.90
Cytoplasmic	122	137	0.82
Transmembrane Helix	138	160	0.93
Non-Cytoplasmic	161	178	0.91
Transmembrane Helix	179	200	0.95
Cytoplasmic	201	243	0.99