YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157109986, gi...
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILKRQSKGG TKQQCSSRNS NSSSTSPLQT ICVFQTVIVS LVLAVFLLPA EISSLENGLA  60
   61 RTPPMGWLSW ERFRCNTDCE GDPENCISEN LFRTMADLVV SEGYAALGYE YINVDDCWLE 120
  121 KSRGPRGELV ADRRRFPSGM KALADYVHAK GLKFGIYEDY GNYTCAGYPG ILGFSQNDAA 180
  181 QFASWDVDYV KLDGCYSLPI DMDHGYPEFG RHLNATGRAM VYSCSWPVYQ IYAGMNPNYS 240
  241 SIIQHCNLWR NYDDIQDSWA SLESIIDYYG NNQDAIIPNA GPGHWNDPDM LIIGNFGLSY 300
  301 EQSKTQMALW AIMAAPLMMS VDLRTIRPEF KAILQNKKII AVDQDPLGIQ GRRIYKHKGI 360
  361 EIWSRPITPI YQTFYSYAIA FVNRRTDGTP SDVAVTLREL GLISPTGYRV EDLYEEVDYG 420
  421 ILSPQTKIKV KVNPSGVVIL RADVQPERFS KRPYNPIFYR YPN

Type	Start	End	Confidence
Cytoplasmic	1	27	0.58
Transmembrane Helix	28	48	0.56
Non-Cytoplasmic	49	463	0.90