YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108878803, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRRKPTEGF LLCGIFFWTL LVHLISTCLA IQLEERMEIV RKVLKEVPLI DGHNDLPWNI  60
   61 RKFLKNQLRE FRFGEDLRDI TPWSTSAWSH TDLRRLKEGM VAAQFWSAYA PCSSQHLDAV 120
  121 QLTLEQIDLI RRLVNLYPQH MALVTTADGI EESHRSGKLA SLIGIEGGHS IGTSLGVLRT 180
  181 FYQLGARYLT LTHTCNTPWA DCCKVDEPGQ VPHIGGLSHF GTLVVTEMNR LGMIVDLSHV 240
  241 SVPTMLDALA TSKAPVIFSH SSAHAICNSS RNVPDHVLKR LSANGGLVMV AFYPHFVSCG 300
  301 EKATLKDVVA HINHIRDVAG VDHVGIGAGY DGVNLVPQGL EDVSRYPYLF AELLESEKWT 360
  361 EEDIAKLAGK NLIRVFKQVE QVRDQLEAQG MLPIDQSIPP EDILGRSYCR YSGPRT

Type	Start	End	Confidence
Signal Peptide	1	30	0.88
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	416	0.99