YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157111931, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIEKILACP IISINARVWR FWSFILKHDY MRYISIIPVT AMTVLMFTDL YRAWGNIGEV  60
   61 IINAYFAVLY FNAVLRVLIL VHYHEEYESF LEKIADVYRE IISMPDEKTK EMVQLFTKRA 120
  121 RVMSVSNLGL GAFISACFVV YPLFTGERRL PYGMHIPGVN KFESPLYEIL YVMQAVLTFP 180
  181 GCCMYIPFTS FFASTSLFGL IQIKSLQYRL ENFKQNGTGK SNKEQRSQLE AIISDHQRVI 240
  241 AYVGELNGLV TYICLVELLS FGMMLCALLF LLVIIEHYAQ LIIVVSYIFM IISQIFAFYW 300
  301 HANEVREESM AIGEAAYSGP WIELDQASKK KLLLVILRSQ VPLEISVGNV YPMTLEMFQS 360
  361 LLNASYSYFT LLKRVYS

Type	Start	End	Confidence
Cytoplasmic	1	29	0.93
Transmembrane Helix	30	51	0.89
Non-Cytoplasmic	52	60	0.74
Transmembrane Helix	61	80	0.90
Cytoplasmic	81	123	0.94
Transmembrane Helix	124	145	0.93
Non-Cytoplasmic	146	175	0.91
Transmembrane Helix	176	200	0.83
Cytoplasmic	201	248	0.95
Transmembrane Helix	249	273	0.89
Non-Cytoplasmic	274	280	0.69
Transmembrane Helix	281	302	0.92
Cytoplasmic	303	377	0.94