YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108874329, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFILTDIHD WYRDLMDNKS DPRVADWPMM SSPLPTLALC IFYAYFSKSL APRIMEKRKP  60
   61 MDLRNLLVGY NLFQTIFSTW IFYEYLQSGW WGHYSFRCQP VDYSDNPLAL RMARTCWWYY 120
  121 ISKFTEFFDT LFFLLRKKNQ HVSTLHVIHH GCMPFSVWMG MKFAPGGHST FFAMLNSFVH 180
  181 IVMYFYYMVA ALGPKYQKYI WWKKYLTAFQ MLQFVAIFTH QFQLLFTECD YPKGFMVWIG 240
  241 LHGVMFLFLF SDFYKQAYSK RKARRAAEAQ NKSKYDALVN GASNGSLANG HHLYQNDKLS 300
  301 NGDLANNNQG ACMPVLDDDA LHQRKVTANG IYVNGMPKPA ANSYSNGNSN GFVEALRDDS 360
  361 DDAVTSATAF DRVRKIQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.88
Transmembrane Helix	27	46	0.82
Cytoplasmic	47	65	0.86
Transmembrane Helix	66	86	0.88
Non-Cytoplasmic	87	167	0.70
Transmembrane Helix	168	190	0.86
Cytoplasmic	191	204	0.80
Transmembrane Helix	205	224	0.89
Non-Cytoplasmic	225	233	0.88
Transmembrane Helix	234	254	0.93
Cytoplasmic	255	377	0.98