YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157123720, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATKRKPIHT QPGSASQRPS MNFRPGMNDT TARAEAKGTR PTATPTSIKE VLTMMVLHVC  60
   61 KKIIFFDTNL KVPLYLGSLF FVSLVGDFLP YPKTYLARSD NLFNVYFVKM GWAWTLLFSL 120
  121 PFLAMTSVTV CCGDHQRLVR NHLPRLGIAT GFWFVWTKVF NIIESSYGRC SVRGFDSKSG 180
  181 CLKAGHLWNG FDISGHAFIL IYSSLVLMEE ARSIIGWESI KEHLRNEEHN RTKQDSMQTT 240
  241 NPLKSLKDDD LKALKYFYTR FTPTIRLLFI GMTMLQLLWD IMLVGTMLYY HRMVEKVLSG 300
  301 IIAVLTWFFT YRAWYPTNSL LPDPVGKGLF NYQTVSKPVE IGVRRRASLL QPNSSQTQDI 360
  361 PKFMGMPLYA ARQQQNASAS TAGLGSPTEA GSAGQGFPSS SSSSSYVSSM NAARLGTAFG 420
  421 ETNSPPFSRF QQSAHRSRFD

Type	Start	End	Confidence
Cytoplasmic	1	71	0.95
Transmembrane Helix	72	91	0.89
Non-Cytoplasmic	92	110	0.92
Transmembrane Helix	111	133	0.92
Cytoplasmic	134	141	0.89
Transmembrane Helix	142	160	0.71
Non-Cytoplasmic	161	192	0.69
Transmembrane Helix	193	208	0.72
Cytoplasmic	209	263	0.79
Transmembrane Helix	264	284	0.85
Non-Cytoplasmic	285	292	0.56
Transmembrane Helix	293	315	0.78
Cytoplasmic	316	440	0.82