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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|157123786, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.64
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTASANEPV RYCRVAFLAL FALLVHVGQS AVIIQKYPLV GDNRLQTELP PSCPSEIYCH  60
   61 GKLLDTVQMA HIYPDSKTFV DMKMKKTPNE TLSAFNDFME QKKEAPTTAE LKAWVESMFE 120
  121 KPGAEFEEWI PDDWIDSPRF LNNIKDLDLR GFAKNLNAVW HQLGRKMIAD VGINPEQYSI 180
  181 IHVDHPVIVP GGRFREFYYW DSYWIVQGLL LSEMNHTTRG MLENFLSIVQ RYGFIPNGGR 240
  241 IYYSMRSQPP LLCGMVKSYV DATNDTQFAM DAVETLEREF EFFMNNYIVE VNGHQLAAYG 300
  301 YKSSGPRPES YREDVISAQV FDKEEDKQDY YCELKAAAES GMDFSSRWFI KDGTNQGNLT 360
  361 DLKCRSIIAV ELNAILYWNA KIISEFYALK NNAQKAQLYE AKAEEIKKAI DAVLWNEDEG 420
  421 AWLDYDLINK KHRHYFVPTN LSPLWTGCYN KDDASLPKKI LAYVEKNELD KYPGGVPNTM 480
  481 ADTNEQWDFP NVWPPMQHML IMGLDGLNSK EAKDLAFKWA QRWVRGNFLA YNETHAMFEK 540
  541 YSAVELGGHG GGGEYEVQTG FGWSNGAVMD LMNKYGDRLT TDDSKDNGGA LVSYSVNTGI 600
  601 IATIVAFVVG IFGSESTR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle