YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108873998, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.84
Transmembrane Helix	36	56	0.90
Non-Cytoplasmic	57	78	0.57
Transmembrane Helix	79	99	0.84
Cytoplasmic	100	111	0.53
Transmembrane Helix	112	131	0.86
Non-Cytoplasmic	132	149	0.68
Transmembrane Helix	150	180	0.71
Cytoplasmic	181	223	0.70
Transmembrane Helix	224	245	0.75
Non-Cytoplasmic	246	269	0.83
Transmembrane Helix	270	292	0.85
Cytoplasmic	293	332	0.85
Transmembrane Helix	333	353	0.87
Non-Cytoplasmic	354	371	0.80
Transmembrane Helix	372	392	0.90
Cytoplasmic	393	419	0.87
Transmembrane Helix	420	440	0.89
Non-Cytoplasmic	441	456	0.72
Transmembrane Helix	457	482	0.78
Cytoplasmic	483	498	0.51
Transmembrane Helix	499	521	0.72
Non-Cytoplasmic	522	538	0.53
Transmembrane Helix	539	565	0.79
Cytoplasmic	566	586	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEENSNVDV LEEQATTSQD DSRMGCCNRM FQFITVYWRT LLVLLVPTLA SLLFVIEYSP  60
   61 AFRCLYVVIV MSLLWVTEAL PLPITSMLPI VLFPLLGILS TSKTCMVYMK EPVVMFIGGI 120
  121 VLALAIEYCN LHKRVALKVI DLIGCSQRRL HLGLIVVAMF LSMWISNTAA VAMMCPIVLA 180
  181 VLEELESQGL CHMYEIDECP EENNKGKNKD KSKDENKKPS QTTLCYLLGT AYASSIGGCG 240
  241 TLIGTGTNLT FKGIYENRFP DANGIDFPDF MFFNVPLMLL DVFLVWLYLQ WHFMGLFRPH 300
  301 SKEAKQSSIG REGEAVAKRV IQTRYKEMGP MTSNEISVAF LFVLSIVLFF TRSPGFVKGW 360
  361 SDVFPGVKIK DATPAILIVI MLFIVPADWR WLNYFKKNSG PLPKEPSPAL ITWKYVNKNV 420
  421 HWSLIFLLGG GFALAEAGQA TGMSALLGES LSGLQSLPPL ATLFVVCLVT SMITEFTSNV 480
  481 AISNIILPVL AEMSVVIKIH PLYLMLPATM CCSYAFHMPV GTPGNAIVAG AGHISIKDMA 540
  541 LAGLGPTVIT VVVMWIGLPT WGAIVYPEIN TFPDWATQDP TNVSLY