YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108873902, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPTASIPTP AAIVQPSTPS SSSTPNESNG YVSNTYYPTY YNGSGHQPLM DVPLQCPGSE  60
   61 ISNTALGLQE LGLKLDRRIE EAVPAGQQLQ ELGMRLRCDD LGSDQDEYLD EEQMMMDRSP 120
  121 DETESNDGEL DELDSDNDLG DDMMNTTSDG ERIIYPWMKK IHVAGVANGS YQPGMEPKRQ 180
  181 RTAYTRHQIL ELEKEFHYNR YLTRRRRIEI AHTLVLSERQ IKIWFQNRRM KWKKDNKLPN 240
  241 TKNVRKKSGD QGKNNAASNP TGGTGKKGRK ANSSSLSNAK KQMSLQSECL RTESLESMTD 300
  301 IHNSLNGSNL GSVPYISASD VTGVLPTNSS NNNNNQESSS HGQQHQQPAP QQLNSSATTN 360
  361 NVNSTGVHSI SIKHDYDLTA L

Type	Start	End	Confidence
Signal Peptide	1	22	0.59
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	381	0.99