YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108872979, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNKFTSACK DELGLRNCGM GHMPAEEFVK SQWQSRTKST FFLLYRLSLA VFFTAVVINS  60
   61 IVVSVSTEDW AKYFIYLTHW GIMMCMGTTV LGAILVTRWY FHPEFSDKIC NSEEMPRAFK 120
  121 IYWMMHNITL IVSICITIIY WGILHNDEMP VDANNILIHA ANCMFMLIDL IIVAYPVRIW 180
  181 HVVQPICFGL LYCIFSVIYY LCDGTDKKGR PYIYNVLDWR TPNKAMVTVV GTIVLAIIIH 240
  241 VLMFFLYKFR SFLYSRWFNP KTILPTNSTI NLQQGKSCDG ISMVYGNDNR GFTITEKY

Type	Start	End	Confidence
Cytoplasmic	1	41	0.99
Transmembrane Helix	42	63	0.94
Non-Cytoplasmic	64	78	0.82
Transmembrane Helix	79	101	0.94
Cytoplasmic	102	121	0.95
Transmembrane Helix	122	144	0.94
Non-Cytoplasmic	145	155	0.90
Transmembrane Helix	156	175	0.91
Cytoplasmic	176	181	0.73
Transmembrane Helix	182	202	0.90
Non-Cytoplasmic	203	224	0.90
Transmembrane Helix	225	247	0.93
Cytoplasmic	248	298	0.94