YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108872847, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.68
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPCSAVTLSL ATISAIIAVA LLAIAFSTDN WLSYEVKRNN IQTFIAKHPD GASLTESFNN  60
   61 RLVYYTRTRG LFRYCYPKEK PPASSVQIYL SPVETHCSNI DYFPQTEEDK SSPGFNEDIM 120
  121 ARLHLARSVI AAFILSFVAI FCAFWTGLSG CWKRSAGAIT ATAILMLTAC LLAAGAMGLW 180
  181 HTVEFFEKEK VVGDDYYQSW TTVLRDNTRI SYDWSYIVAW AGVASSLLAS ILLSGAAVCL 240
  241 RGEREKEEQL NLQYLMPVYP QKQPPYPYGG FPQPQLYPQP YYHGSQYGPY NY

Type	Start	End	Confidence
Signal Peptide	1	27	0.64
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	128	0.96
Transmembrane Helix	129	148	0.95
Cytoplasmic	149	156	0.81
Transmembrane Helix	157	177	0.93
Non-Cytoplasmic	178	216	0.92
Transmembrane Helix	217	240	0.91
Cytoplasmic	241	292	0.98