YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157128927, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLHISTKYEH MFPDPNNQYY GGYPQQPGYN QGGYPSQPYP PTQGYPSYPP QAGYPPQPGY  60
   61 PPQAGYPPQP GFIGQPAMPP GGNYSNYDPE DQSAKGFDFS DQSIRKGFIR KVYSILTVQL 120
  121 GITLGFIALF MYHKGTKLWV QRHPEMFWIA LGVMIVTLIS MACCGNVRRK APMNFIFLAL 180
  181 YTFAQSFLLG VTTANFSSDE VLLAVGITAA VCLGLTLFAF QSKWDFTVMG GVLFVAVIIL 240
  241 MLFGIIAIFF PGKTITIVYA SAGALLFSIY LIYDTQLMMG GEHKYSISPE EYIFAALNLY 300
  301 LDIINIFMYI LTIIGASRD

Type	Start	End	Confidence
Cytoplasmic	1	111	0.99
Transmembrane Helix	112	133	0.91
Non-Cytoplasmic	134	145	0.91
Transmembrane Helix	146	167	0.91
Cytoplasmic	168	174	0.83
Transmembrane Helix	175	194	0.94
Non-Cytoplasmic	195	200	0.84
Transmembrane Helix	201	220	0.95
Cytoplasmic	221	227	0.82
Transmembrane Helix	228	249	0.94
Non-Cytoplasmic	250	254	0.82
Transmembrane Helix	255	273	0.94
Cytoplasmic	274	293	0.85
Transmembrane Helix	294	316	0.86
Non-Cytoplasmic	317	319	0.85