YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157131114, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFKKDLALL VKPYYWVNIL MSISYIVAKR MPMVCNFLWT YLFNQDQCEL DGRETEILFF  60
   61 LLIVVMIRTR KTGSVTMINY LTSSFMYTKL ANLGLWFYSD IRLGLIYGVL FILVALILPE 120
  121 PTYSGPENVT YFRLENGLED EMEKDKRVNW LVTFYTVWNP ACVNFAPIFA ELSAEYNLPN 180
  181 LRFGKVDIGR FPNIGKKYHV SDSSLSRQLP SVILFRNGKE VARRPYADAK GKLVKFFFSA 240
  241 DNVKAAFDLN NLYKECKENP IKGAKAITAS EKKKN

Type	Start	End	Confidence
Cytoplasmic	1	13	0.80
Transmembrane Helix	14	33	0.62
Non-Cytoplasmic	34	75	0.52
Transmembrane Helix	76	91	0.34
Cytoplasmic	92	97	0.37
Transmembrane Helix	98	123	0.73
Non-Cytoplasmic	124	275	0.57