YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157132472, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.92
Transmembrane Helix	20	43	0.82
Non-Cytoplasmic	44	135	0.97
Transmembrane Helix	136	156	0.91
Cytoplasmic	157	164	0.86
Transmembrane Helix	165	183	0.97
Non-Cytoplasmic	184	190	0.75
Transmembrane Helix	191	212	0.93
Cytoplasmic	213	220	0.93
Transmembrane Helix	221	243	0.93
Non-Cytoplasmic	244	249	0.79
Transmembrane Helix	250	269	0.94
Cytoplasmic	270	339	0.99
Transmembrane Helix	340	358	0.92
Non-Cytoplasmic	359	367	0.81
Transmembrane Helix	368	389	0.90
Cytoplasmic	390	396	0.84
Transmembrane Helix	397	416	0.95
Non-Cytoplasmic	417	422	0.79
Transmembrane Helix	423	445	0.90
Cytoplasmic	446	452	0.86
Transmembrane Helix	453	476	0.84
Non-Cytoplasmic	477	485	0.76
Transmembrane Helix	486	505	0.95
Cytoplasmic	506	578	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYDEVLTHL GGFGRYQKKI YVLLCLPAIS CAFHKLAGVF LLATPDYRCQ LPFEADNVTY  60
   61 QLPPELMSMA YPMDSFSKKY STCTYLDANF TDEYMNGGTP AKEVASCDHW IYDRSKFESS 120
  121 TVTEWDLVCD RNWLRASADS LFMVGVMLGS IIFGWLSDKY GRKPIFFASL VTQVIFGVLA 180
  181 GIAPEFFTYT IARILVGATT SGVFLVAYVI AMEMVGPKDR LYAGVVCMMF FSVGYMLTAG 240
  241 FAYFIHDWRT LQIALTLPGI LFMTYWWLIP ESSRWLISNN RPSEAITLIK KVAKSNKVTV 300
  301 PEDVLDKLVE EDKAALESDK NEPKPSLIDV FKHPNLRRKA LLIFFDWFVN SGTYYGLSWN 360
  361 TNNLGGNPLL NFVISGFVEI PAYSFLLLTL NRWGRRTILC GCMIFAGVML LSTMLVPSNM 420
  421 PWLIVVLAML GKLAITSSYG TVYVFSAEQF PTVIRNVALG AASTSARVGG ILAPYFNLLG 480
  481 DYWKPLPLLI FGAMAFAGGL LSLMLPETHN QKLPETIADG ENFGKVKVMP GEEGRRGDVE 540
  541 NKTAEEMQVL NAAHLNGDAP RSVVENTNEK RAANDEDE