YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157134562, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVEITPNYS YIFDFENEFI HQDTRVWMVK NWTYVFYYCG IYMAVIFGGQ HFMQNRPRFE  60
   61 LRGLLAIWNS LLAMFSIMGA CRTAPELVHV LRHYGLFHSV CVPSFIEHDR VSGFWTWLFV 120
  121 LSKLPELGDT VFIVLRKQPL IFLHWYHHIT VLMYSWFSYT EYTASARWFI VMNYCVHSVM 180
  181 YSYYALRALN FKPPRSIAMV ITTLQLTQMV VGCAINIWAH GFLQTAGKGS CNISEMNIKL 240
  241 SIAMYFSYFV LFARFFYKTY LSTNARKGKR SIQSASSNGS ASVQYSSISS SKQASMGGSI 300
  301 NSNLLTAAQQ TDKVKAHKKP RNQISTGIFS YLYLRASSRV TFLSSYAERE LAPIAFNTTL 360
  361 RCTRRSNAVL VVQLIK

Type	Start	End	Confidence
Cytoplasmic	1	33	0.63
Transmembrane Helix	34	53	0.93
Non-Cytoplasmic	54	63	0.53
Transmembrane Helix	64	84	0.89
Cytoplasmic	85	140	0.50
Transmembrane Helix	141	158	0.70
Non-Cytoplasmic	159	165	0.67
Transmembrane Helix	166	186	0.85
Cytoplasmic	187	196	0.88
Transmembrane Helix	197	220	0.87
Non-Cytoplasmic	221	239	0.85
Transmembrane Helix	240	257	0.92
Cytoplasmic	258	376	0.93