YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108870219, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHSEHHDYS HQMNHSSDAD MMHHGHEGHH GSMEHSLQDH TMDQGASAHA AAGHSGHAGM  60
   61 VHHMMSMAFH GGYNETILFE QWKIDSLSGL LWSMLLIFIM AALYEGLKYY REHLFWKTYN 120
  121 ALQYRPVTVT EKSPGNGNVA NNNGLAANGS GDEASRVVHM VGEVIHKQPR PTMLSTMHLF 180
  181 QTFLHILQVT LSFLLMLIFM TYNTWLCIAV VLGAALGYFL FGWKKSVIVD VTEHCH

Type	Start	End	Confidence
Cytoplasmic	1	49	0.83
Transmembrane Helix	50	70	0.63
Non-Cytoplasmic	71	87	0.74
Transmembrane Helix	88	107	0.92
Cytoplasmic	108	176	0.89
Transmembrane Helix	177	198	0.84
Non-Cytoplasmic	199	203	0.59
Transmembrane Helix	204	223	0.90
Cytoplasmic	224	236	0.85