YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108869603, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYSTSPTPS RSNSSSLLGG MSSSRTTSPL PPPANYRNDC MSATNKSYKY LRRFIKFDQM  60
   61 DFEFAMWQML YLFIAPKKVY RNFNYRKQTK SQFARDDPAF LVLLVGCLCV TSIGFAWVLS 120
  121 LGIGQSLVFL LYVVFVDCIL CGMVVATMLW FITNHYLRDR ASDLDVEWGY AFDVHLNAFF 180
  181 PPLILLHFIQ LFFYHPLISQ DWFISTLIGN TIWLAALSYY IYITFLGYNA VPNLRNTRII 240
  241 LVTLPLVFLF YIVTLIIRWN LSVSLMYFYH YRVL

Type	Start	End	Confidence
Cytoplasmic	1	98	0.88
Transmembrane Helix	99	121	0.93
Non-Cytoplasmic	122	128	0.81
Transmembrane Helix	129	152	0.94
Cytoplasmic	153	171	0.86
Transmembrane Helix	172	194	0.85
Non-Cytoplasmic	195	202	0.83
Transmembrane Helix	203	228	0.79
Cytoplasmic	229	238	0.79
Transmembrane Helix	239	259	0.93
Non-Cytoplasmic	260	274	0.86