YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157103941, gi...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFNTACQLP GKILLSASNG TLLQRIPSTI ASRVLAGTAR RKLLFRCAFL SPACLYHQNR  60
   61 GDGAASGHRL LGVQPNTPFY KCFSSSLKKG DDFQIKSVEG REILQNVLEK NKQLLQEKKK 120
  121 VIIQDIRDRK DKVKERVEEV IERENVATIP NLLCVGRIVM SPYLGYVIVQ SEFSLAMGML 180
  181 VVAGLTDLAD GFIARNWPSQ ASRLGSFLDP MADKILVGSL VISMSYAELL PLWLTGMILF 240
  241 RDVFLIGAGF VIRYISLPQP RTLSRYFDVT HATAQLAPTF ISKVNTAVQL AAVATTLGAP 300
  301 IWNYVDHPYL HALWYLTGFT TVAAAMSYII NKDTYKILKN NKQP

Type	Start	End	Confidence
Cytoplasmic	1	152	0.75
Transmembrane Helix	153	167	0.44
Non-Cytoplasmic	168	172	0.49
Transmembrane Helix	173	194	0.74
Cytoplasmic	195	210	0.56
Transmembrane Helix	211	230	0.59
Non-Cytoplasmic	231	237	0.52
Transmembrane Helix	238	257	0.87
Cytoplasmic	258	283	0.79
Transmembrane Helix	284	302	0.80
Non-Cytoplasmic	303	310	0.78
Transmembrane Helix	311	330	0.95
Cytoplasmic	331	344	0.93