YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157106662, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRYDLNAP VPGMAPVTLP RETRRPLPDD DLLNVVDADY TIRKRRVWSP EEDDSLASED  60
   61 MDLLDDDDEL EEEEDDGVGC PLPSTPEDTQ LLEAEMTEVL KAGVLSDEID LGALAHNAAE 120
  121 QAEEFVRKVW EASWKVCHFK HLPAWLQDND FLHKGHRPPL PSFSACFKSI FRIHTETGNI 180
  181 WTHLLGCVMF IGVATYFLTR PSFEIQLQEK LIFLSFFIGA IVCLGCSFIF HTLCCHSEMV 240
  241 GKLFSKLDYC GIALLIMGSF VPWLYYGFYC HYKHKLIYLT VVIVLGVTSI ITSLWDKFSQ 300
  301 PNLRPLRAGV FMSFGLSGII PAIHYVLMEG WFSKISQASL GWLILMGLLY ILGALFYALR 360
  361 VPERWFPGKC DIWFQSHQIF HVLVLVAAFV HYHGISEMAM YRVTVGECDI PHQHPAISF

Type	Start	End	Confidence
Cytoplasmic	1	178	0.91
Transmembrane Helix	179	199	0.93
Non-Cytoplasmic	200	210	0.86
Transmembrane Helix	211	234	0.91
Cytoplasmic	235	246	0.80
Transmembrane Helix	247	267	0.92
Non-Cytoplasmic	268	275	0.76
Transmembrane Helix	276	295	0.97
Cytoplasmic	296	305	0.80
Transmembrane Helix	306	328	0.89
Non-Cytoplasmic	329	337	0.84
Transmembrane Helix	338	359	0.93
Cytoplasmic	360	376	0.78
Transmembrane Helix	377	395	0.87
Non-Cytoplasmic	396	419	0.85