YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|158320490, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRRVVITGM GCITPIGSSI DKFWDSLIKG VSGISNITRF DTTDFPTQIA GEVKDFCPEE  60
   61 YIEKREVKRM DRFSQFAVAA SKMAVADGNL DLDAIDKNRF GVILGSGIGG METMEEQSKK 120
  121 LLEKGPGRIS PFFIPMMISN MGSSQISIAL GAKGPNQTVV TACASATNAI GEAFRTIQNS 180
  181 DADIMITGGT EASITPLSIA GFCSMKAMST RNEDPTKASR PFDANRDGFV MGEGAGILLI 240
  241 EELSHALKRD ARIYGEIVGY GTTSDAYHIT SPSPNGEGGA RAMSKALQDA DITYEKIDYI 300
  301 NAHGTSTPYN DEFETAAIKD VFKEHAYKLV MNSTKSMTGH LLGAAGAVEA IACILSINKS 360
  361 MVHPTINYET PDPKCDLDYV PNKARTLNID YALSNSLGFG GHNATIIFKK YE

Type	Start	End	Confidence
Signal Peptide	1	19	0.59
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	412	0.94