YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|106773667, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHKYIIKRIA MLIPVMLGVS FIVFTLMYMT PGDPAKIMLG ESAPKEEVEK LREELGLNDP  60
   61 FLIQYGNYVK KAVFDQDIGR SYATKRPVAN EIMARFPATL KLASIGVLVA VSIGIPVGII 120
  121 SATKQYTIFD QVSMVLALVG VSMPNFWQGL MLILLFSVKL GWLPASGFTS LKHMVLPALT 180
  181 LGTGSAATIT RMTRSSMLEV IRADYIRTAR AKGQAESVVI NTHALKNALI PIITVVGLQF 240
  241 GGLLGGAVLT ESIYSIPGVG RLMVDSIKSR DFPIVQGGVL FIAITFSAIN LLVDILYAFV 300
  301 DPRIKSQYK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.95
Transmembrane Helix	9	30	0.93
Non-Cytoplasmic	31	101	0.96
Transmembrane Helix	102	122	0.93
Cytoplasmic	123	133	0.77
Transmembrane Helix	134	156	0.84
Non-Cytoplasmic	157	172	0.77
Transmembrane Helix	173	192	0.90
Cytoplasmic	193	228	0.94
Transmembrane Helix	229	250	0.87
Non-Cytoplasmic	251	278	0.81
Transmembrane Helix	279	300	0.90
Cytoplasmic	301	309	0.94