YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|158140582, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLEKTSTKT IDVTNNNAAK KKKKTGPWRD VFNRLKKNKM AMFGLVIIIL LVFLALSADF  60
   61 IAPYGYDDQN LKDRLISPNS QYLLGTDNFG RDILSRIIYG SRISLQVGFI AVGISAIIGG 120
  121 ALGSIAGYYG GRLDNFIMRA MDILLAIPSI LLAISIVAAL GPGLQNVMIA VGIGSIPSYA 180
  181 RIVRASVLSI RDQEFVEAAR AVGANDFRII TKHILPNAMA PIIVQATLGV AGAILSAAGL 240
  241 SFIGLGIQPP TPEWGAMLSS GREYLRDNWY VATFPGLAIM ITIFALNLLG DGLRDALDPR 300
  301 LKN

Type	Start	End	Confidence
Cytoplasmic	1	40	0.98
Transmembrane Helix	41	62	0.91
Non-Cytoplasmic	63	106	0.96
Transmembrane Helix	107	129	0.92
Cytoplasmic	130	139	0.81
Transmembrane Helix	140	160	0.90
Non-Cytoplasmic	161	166	0.63
Transmembrane Helix	167	183	0.73
Cytoplasmic	184	221	0.70
Transmembrane Helix	222	247	0.86
Non-Cytoplasmic	248	268	0.72
Transmembrane Helix	269	290	0.91
Cytoplasmic	291	303	0.69