YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|106893403, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEFLSEYNI IYVGLTASLI AGLCTGFGAI PIFFTKEVSH KTLDTMLGFA AGVMLAATSF  60
   61 SLIIPAIEYG GSGIQGATIT VIGIMLGGIF LDLMDQHTPH NRILKLTPNG ERNNLTKVWL 120
  121 FIIAITLHNF PEGLAVGVGF GNGDIGNGMS IAIAIGLQNI PEGLAVALAL IREKYSTTKA 180
  181 FLIALITGLI EPLGGIIGVG LVQIAQPILP YALAFSAGAM LYVICDEIIP ETQKHSYERR 240
  241 ATYGLLIGFV IMMFLDVSLG

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.88
Transmembrane Helix	12	34	0.93
Cytoplasmic	35	44	0.87
Transmembrane Helix	45	67	0.91
Non-Cytoplasmic	68	73	0.83
Transmembrane Helix	74	94	0.95
Cytoplasmic	95	114	0.94
Transmembrane Helix	115	135	0.87
Non-Cytoplasmic	136	148	0.77
Transmembrane Helix	149	171	0.90
Cytoplasmic	172	179	0.91
Transmembrane Helix	180	201	0.93
Non-Cytoplasmic	202	207	0.75
Transmembrane Helix	208	229	0.86
Cytoplasmic	230	240	0.88
Transmembrane Helix	241	259	0.92
Non-Cytoplasmic	260	260	0.98