YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|106893314, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.28
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLFQVFTTI YTIVNIIIAI DILLDNRDPS STVAWIMVLF LVPGVGIFLY FYIGRNHRKQ  60
   61 KTFIKKRRED YEILNHLLSN QLGFIDYGEM FKRNFDDTRG KIIPLLLNNT KAPITVNNKV 120
  121 KVLQNGESTF SEMIRAIENA KDHIHIEYFI IKDSHIGRML QATLIKKAKE GVEVRLIYDA 180
  181 VGSFRLGKDF LNPLREAGVH LKVFLPVTLP FFGSRLNYRN HRKILVVDGT IGFVGGLNIG 240
  241 DEYLGKNKKM GFWRDTHLML QGEAVYVLQG IFLADWYFVS NENIDNLRYF PSQGYCGEKI 300
  301 VQIASSGPDS HWASIHQAYF SAINTARDRV YITTPYLVPD EGILLALKTA ALRGVDVRLL 360
  361 LPIKPDHRTV FLASKSHFEE LLEAGVKIYQ YGKGFVHGKV FIVDHNFVSI GTANLDIRSF 420
  421 KLNFEVNAFI YDKEVNRKTA KDFFEDLRVS KRVYLEEYVK RPVLHKIAES VARIFSPIL

Type	Start	End	Confidence
Cytoplasmic	1	6	0.58
Transmembrane Helix	7	24	0.90
Non-Cytoplasmic	25	31	0.59
Transmembrane Helix	32	54	0.93
Cytoplasmic	55	257	0.61
Transmembrane Helix	258	278	0.28
Non-Cytoplasmic	279	479	0.66