YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148655927, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNYGFLIDH RKCIGCHACS TACKSENEVP LGVYRTWVKY VEAGTFPDTR RYFQVTRCNH  60
   61 CANPPCVRIC PVTAMYQRSD GIVEFDPRVC IGCKACLQAC PYDAIYIDPE TRSAAKCHFC 120
  121 SHRIELGLKP ACEVVCPEQA IISGDLDDPN SLIRRLIARE PVTVRKPEQG TAPKLFYIDA 180
  181 NEVTLTPTTS SHHATFVWAD VTSDQARSLA TQRDIIPLEA AHSGSSNGRT AHHAASGVPL 240
  241 RIPGVQGLGY GGNAFAPARV AGQMVQTAYN AQHKIPWHWP VPAYLVTKGI GSGIFMATAL 300
  301 TIGLGIASLS PFFTAVALFL ALLFTGITTA LLVYDLEKPR MFLTILTRPQ WRSWLTRGAF 360
  361 LLIAFTAVAG VWFLVEAGMA AGMLSEATGM ALRSIFAWVG LPSGVMAAIY TAFLFAQAEG 420
  421 RDLWQSPLLP LHLLIQALMV GSGTLLATGL ALPLPAGMDT FIVWLFGVSL ALDLFVTLLG 480
  481 ESGIPHASEV AARAAHAISH GHYRRYFWQG SILLGHLLPL ALIALAVAFP ATGGMALALA 540
  541 GVAAIIGLYA FEYAFVMAPQ EVPNS

Type	Start	End	Confidence
Cytoplasmic	1	283	0.95
Transmembrane Helix	284	306	0.91
Non-Cytoplasmic	307	312	0.76
Transmembrane Helix	313	334	0.94
Cytoplasmic	335	353	0.95
Transmembrane Helix	354	375	0.94
Non-Cytoplasmic	376	394	0.88
Transmembrane Helix	395	416	0.93
Cytoplasmic	417	430	0.88
Transmembrane Helix	431	452	0.91
Non-Cytoplasmic	453	460	0.78
Transmembrane Helix	461	484	0.88
Cytoplasmic	485	505	0.93
Transmembrane Helix	506	528	0.91
Non-Cytoplasmic	529	534	0.72
Transmembrane Helix	535	556	0.90
Cytoplasmic	557	565	0.91