YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|106891733, gi...
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLPSLSNEE IRRYSRHLIL PEFGMEGQRK LKQGSVLLIG TGGLGSPLAL YLAAAGVGHI  60
   61 GLVDFDIVDE SNLQRQIIHG TSTLGIRKTE SAKMRLRDLN PHIDIATYDV QITSDNAFDL 120
  121 IRPYDVIVDG TDNFPTRYLT NDACVMLGKP NVYGSIFRFE GQATVFSPKH GGPCYRCLYP 180
  181 EPPPPGLVPS CAEGGVLGVL PGVIGTIQAT EAIKLLTGIG EPLIGRLLLY DALAMRFREL 240
  241 KLRRNPDCPV CGDHPTVTEL IDYQQFCGIS PEEAHRDATI EITPAEVADW LHSDNPPFLL 300
  301 DVREPNEWEI CHIPGAVRIS VNELAERMNE LDSAVEMVVY CRSGVRSARA VELLRQAGFR 360
  361 KVKNMAGGIL RWSDEVDPSV PKY

Type	Start	End	Confidence
Cytoplasmic	1	34	0.78
Transmembrane Helix	35	57	0.71
Non-Cytoplasmic	58	383	0.95