YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148568161, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	24	0.97
Transmembrane Helix	25	45	0.94
Non-Cytoplasmic	46	55	0.79
Transmembrane Helix	56	76	0.90
Cytoplasmic	77	96	0.85
Transmembrane Helix	97	116	0.95
Non-Cytoplasmic	117	121	0.92
Transmembrane Helix	122	142	0.93
Cytoplasmic	143	154	0.78
Transmembrane Helix	155	176	0.85
Non-Cytoplasmic	177	198	0.75
Transmembrane Helix	199	219	0.90
Cytoplasmic	220	229	0.98
Transmembrane Helix	230	253	0.84
Non-Cytoplasmic	254	267	0.82
Transmembrane Helix	268	288	0.94
Cytoplasmic	289	299	0.85
Transmembrane Helix	300	322	0.80
Non-Cytoplasmic	323	326	0.52
Transmembrane Helix	327	351	0.81
Cytoplasmic	352	389	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHTSTTVPH STPSVTRQLS ALDRYLTLWI FLAMALGVGL GYFLPGVEQF INRFQVGTTN  60
   61 IPIAIGLVLM MYPPFAKVKY EELGEVFRNT KVLGLSLIQN WVVGPILMFG LAIIFLRDYP 120
  121 EYMVGLILIG LARCIAMVIV WNELAKGDTE YAAGIVAFNS LFQVFFYSIY AWVFITVLPP 180
  181 LFGMQGSIVR IGIVQIAESV FIYLGIPMIA GFLTRFILLR ARGREWYERV FVPRISPLTL 240
  241 IALLFTIVLM FSLKGELIVQ IPLDVVRIAI PLLLYFVLMF LVSFWIGYRL GADYRKTTTL 300
  301 SFTAASNNFE LAIAVAVAVF GIGSGAAFAA VIGPLIEVPV MIGLVNVAFW FQRRYFAHEA 360
  361 QPADVLLQTT AEAGCGSPVR DPGQRTANR