YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|106770733, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.81
Transmembrane Helix	6	24	0.93
Cytoplasmic	25	31	0.76
Transmembrane Helix	32	52	0.89
Non-Cytoplasmic	53	71	0.82
Transmembrane Helix	72	95	0.84
Cytoplasmic	96	102	0.73
Transmembrane Helix	103	123	0.88
Non-Cytoplasmic	124	129	0.67
Transmembrane Helix	130	147	0.91
Cytoplasmic	148	175	0.95
Transmembrane Helix	176	198	0.87
Non-Cytoplasmic	199	212	0.78
Transmembrane Helix	213	235	0.84
Cytoplasmic	236	247	0.80
Transmembrane Helix	248	271	0.83
Non-Cytoplasmic	272	281	0.62
Transmembrane Helix	282	299	0.94
Cytoplasmic	300	306	0.74
Transmembrane Helix	307	326	0.90
Non-Cytoplasmic	327	333	0.70
Transmembrane Helix	334	355	0.92
Cytoplasmic	356	367	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIVTIVLFV LGLALLIVGA EGLVRGASRM ALGLGISPLV VGLTVVAFGT SAPELAVSIQ  60
   61 SALSGPNGAD VALGNVVGSN IANVLLILGI SAAITPLVVQ QQLIRLDVPL MIGISVVVFV 120
  121 MALDGTISRI DGLILFAGII AYTVFAIRQS RQESAEVQEE YHAEFDANRP QSIGDWLKNV 180
  181 AFLIGGLALL VVGSRWMVDG AVSFARVFGV SELVIGLTIV AVGTSLPEIA TSIVAALRGE 240
  241 RDIAVGNVVG SNIFNLLSVL GLSSVVAPAG ISVAPAALNF DMPVMLAVAV ACLPIFFTGR 300
  301 LIARWEGWLF LGYYIAYTLY LILAASQHDI LPAFSAVMGL FVLPLTAVTL VFLAWRALRA 360
  361 ERRVALP