YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|106890679, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTCPKKARRW CGSGDAPPYR SPSAGRRVYL THNRSRTQSF ISPESKSVDT PHTQPRLSVQ  60
   61 RPARRASRRQ RIEAINAYIF MAPAILGLLL FTLGPMAASF LLSFTEYNIL TDPRWNGLAN 120
  121 YEKLFNDKLF WQSLRVSAIY SIVSVPLGLT IALGLALLLN HKMRGIMVFR SVYYLPTVIS 180
  181 GVGVAMLWRW LFNGDFGIIN VLLRGVGIRG PNWLFDETWA LVALIIASLW GIGGTMLIFL 240
  241 AGLQGIPQEL YEAAEIDGAG RWRQFSSITL PMISHVTFFN LVLGVIGALQ VFTDAYVITG 300
  301 GGPNNATLFL SVYLYRHAFQ YLNFGYAAAV AWVLFLIVLA LTLLVFKSSP LWVYYESERP 360
  361 GRG

Type	Start	End	Confidence
Cytoplasmic	1	73	0.99
Transmembrane Helix	74	98	0.88
Non-Cytoplasmic	99	137	0.95
Transmembrane Helix	138	159	0.95
Cytoplasmic	160	170	0.85
Transmembrane Helix	171	192	0.92
Non-Cytoplasmic	193	219	0.96
Transmembrane Helix	220	243	0.91
Cytoplasmic	244	267	0.92
Transmembrane Helix	268	292	0.82
Non-Cytoplasmic	293	323	0.62
Transmembrane Helix	324	346	0.91
Cytoplasmic	347	363	0.60