YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148658643, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQQAELRQQ TATRQRERHQ RAFALQQRWL WRILGYAAIV LSVIVIGLPI YWMLIASFKT  60
   61 SREIYTVPPT WIPLNPTLDN YPAAWQAAPF ARYYLNSIIV TLVTTVSKMT LAVLTAYALV 120
  121 FLRFPGKNIV FLIVLAALMV PAQITIVPNF LTMGDLGLVN TYWGLILPGA ATAFGTFLMR 180
  181 QYFMTLPREV FEAAEIDGAG HMRRLWAIAI PLAMPALVTT GLFAVVNEWN EFLWPLIITS 240
  241 TEDMRTLPIG VARLLDQEGL ARWGVVMAGT MFVVLPVVLL FVWAQRYIVE GIAAGAVKG

Type	Start	End	Confidence
Cytoplasmic	1	28	0.98
Transmembrane Helix	29	52	0.89
Non-Cytoplasmic	53	97	0.90
Transmembrane Helix	98	121	0.86
Cytoplasmic	122	128	0.84
Transmembrane Helix	129	147	0.96
Non-Cytoplasmic	148	161	0.76
Transmembrane Helix	162	184	0.89
Cytoplasmic	185	204	0.96
Transmembrane Helix	205	226	0.95
Non-Cytoplasmic	227	262	0.92
Transmembrane Helix	263	284	0.92
Cytoplasmic	285	299	0.91