YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|106760746, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMQSYDLTIV GGGIVGLTLA ASLADSALSI ALIETSNRPI LPEKPVNRVS AISFASKKIF  60
   61 EKLSVWQQLD SGRITAYDSM LVWDKDSFGK IEFSAQQVGY SELGYIIEND NLCLALLDTV 120
  121 QKQKNVSFYS PDSLNDIVFG EGEAWLTLHS GKTLTSKLVV GADGANSWLR EKSTIPLTFW 180
  181 DYQHHALVAT IKTELPHEHC ARQIFTPDGP LAFLPLFEQN LCSIVWSVSP QKAEQLKNLT 240
  241 AVEFNKQLSR NFDNRLGLCE LQSERFSFPL RMRYARDFAK HRIALIGDAA HTIHPLAGQG 300
  301 VNLGLLDAVS LGQTIEQNIA AEKDIGLYKN LRYFERWRKT EAAQMIASME LLKQLFEGDN 360
  361 PLQKALRDVA LVFTDQVSPL KKSFIKQAMG LSGELPLLAK

Type	Start	End	Confidence
Signal Peptide	1	24	0.56
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	400	0.97