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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|119865539, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.86
Topology Confidence: 0.33
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFTSLKFKV VALILLVLVI TSAATLYFTQ RDVGSAMLRA EQSSAENVLQ LAELNIRSSY  60
   61 DQLISDKIEL LTQLKKEMVQ TAKVSNSVLH EFMLLSQGGR LSKEEAQQRA KRWLSKVDYP 120
  121 SGDIFLFDHK GTILSSSQSK LNGVAITDIR DVKGRLIYDA MRDDQLEPRG DTAIFSWQKP 180
  181 WQTKPSQFMG QFLPVNGWSW TLAVVVNFDN VEQESQRKMD SIIATLTQTF TKIQIAKTGY 240
  241 AFLFDGDKKI LIAPPEDNLD NLDNLDKFKD TSGWLPRYSS VLDKIIAVNG KNKSAISYND 300
  301 PFSGDREVEV FTSYFKAFDW YLGVVVPMAE IKAPGKNLIK RQSIIIALIS LVGLAAALLL 360
  361 VFRISRPLNT LASYAKALPT QDFSQQNPDT IKIKRLAMKY SDEVGRLAES FVFMEASIRK 420
  421 NIQQALHEKE IAVKASQAKS EFLATMSHEI RTPMNGVLGM TELVLETELS SEQRRFMEMI 480
  481 KSSGFGLLDI INDILDFSKI EAGKLQLDNH PMQLQELIKH LVTSLSPLAK KKGLQLNYNL 540
  541 PQEMDTWVLG DRIRLRQVLT NLISNAIKFT QRGEVLVSAV IFEQSATALS LQIRVRDSGI 600
  601 GIAPENQDKI FESFSQADSS TTRNYGGTGL GLAISKQLIE MMGGSIGFSS ELGQGTTFWF 660
  661 DLKLKPTEQI LSDETLPVST LEQQQITLQG KILLVEDHPV NQEFAMQILS GLGVDLHLAG 720
  721 NGVEALKQLK EQNYDLVLMD CQMPVMDGYR ATELIRQKEQ ENGSPRLPII ALTANAMIED 780
  781 RQRCISAGMD DYLSKPFNKA QIVVLLQRWL SADSGLMAVV EPEMAVEKAT ATKVIEPEIA 840
  841 VSNEPLLPAI IAQLQEMDDN DGFFNRIVDA YLEKSPADIE QLNQGLARSD PEALRKAAHS 900
  901 FKSSSYNLGA HKLAELCKTL EKRVRDKDLE EAASLCVSID GEYQRVRMAL IKIKENNNAE 960
  961 NSDEQWSH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle