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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|106882912, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.80
Topology Confidence: 0.29
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEKVNRLVV FLFLLVSICF YPSMSQAVQT STAAVNIQSP ITGSQVVPES DRDNLSLTVE  60
   61 ERSFLAVHPI VRAHNEQNWI PFNFYRDGKP QGFSIDLMNI LAKKLGIKIE YISGPTWDEF 120
  121 MGMLKNKEID IIGNMVETED RKEFANFTLP TIKNPLNIIS KTNTPFRNLK ELEGHTVSIV 180
  181 KGFWYQNLLE KNFPAIKLNL VDTNVDALKD VAFGTADATI DIGVVMQHLI LEYNIPNLTI 240
  241 SGETKILGGE NFYNRIGVRK DWTLLASSLD KALKSLTFQE KYQLKKKWLT MQSTTESARI 300
  301 TLTEQEQGYL KIHPTASIAL ISDYAPFTYQ ENGEVKGFVN DLLLHISKKT GLKFVQKVDH 360
  361 WGNNLNKFKK KEVDIIADIS YKKERESFTL FTTPYYEIPV VIFTREDFKN FQGLKSLKGK 420
  421 KVGIQEAIFY EKELREMGGM ELVSFDNYED QSKALAYGKI DALIQSLSVI NYQVRKYGLS 480
  481 NIRVAGEFEL EGIGKEDLRF GVRTDKNILY NILQKGLDSI SEEQLAIITN RWLSTDLKVI 540
  541 DSKENKLSLS SAEQHYLENR NEILMCANPN WMPFESISKA GIHEGMAAEF MSIISQRIGK 600
  601 NIKLVPTKNF SETLSISKQH QCDILSLLQE TTERKEYLNF TEPYLQTPIV IATRYDELFI 660
  661 DDINKILNRR FTGIKDFAYI NKLKNKYPGI IIDEVSSVEE GLKKVRSGEA YGFLFSLAAI 720
  721 RYKIQQSRIT DIKIAGKFDL NNDLSVAVRN DDTMLFSIMQ KAVGSLTDTE RQNIYNKWVS 780
  781 IVFEKTFDYA LLWKILAIFL AVLLGIFYWN RRLTMMNRAI HKANMAKSEF LANMSHEIRT 840
  841 PMNAIIGLSE LSLNQDMTPQ LRDYLSKIHS SGNSLLGIIN GILDFSKIEA GKLDLENIEF 900
  901 SLLDVLDNIS NTFYFTLAEK NIELITSIDP DVPWHLVGDP LRTGQIFTNL INNAIKFTNK 960
  961 GQITICASCL EKDDKQVRLL FSVADTGLGI PKDRIASLFE PFAQADGSTS RKHGGTGLGL1020
 1021 SICKRLVEEM NGRIWIESEQ GKGSVFSFEL EFGVSQSNED NKLLLPPALR GLHALVVDDN1080
 1081 PVTLKVIEKM LIHLKFNVTT TESGEKALSV LENALGNNTV DLAIIDWQMG GIDGIETAKK1140
 1141 IKENPSIPKM PMVLMSGSDR DGLLGQKSKQ VGFDSFVLKP VNRSILVETI LTVFGYRDDI1200
 1201 NKNLKRKIKV DSARLDAIGG AKILLVDDNE INRQVAREFL ENAGLLVTTA TNGREAVNSV1260
 1261 KSHVFDAVLM DVQMPEIDGY EATQKIRRWE KTRVDLQPTD GSPVLPIIAM TAHAMEGDKE1320
 1321 RCLAAGMNDY VTKPIDTRQL FEALSRWIKP GDRKKANITA APEKDETHIP KEISGIDIVT1380
 1381 GLQRVGGNKK LYKSLLLAFV DIHSQTVQQI RSALESNEIK KAADLAHTYK GVSGNIGATA1440
 1441 LFSLTSELEQ VIKQDWQSEI NGLLNKLEEE TNIMTHSIAL LLGREKKVGN RGPDYNVTSS1500
 1501 PVDSSLLPVV LDSLASCLRD NDLDAIDNVK KLATIIGADH QQSLEEIEDL VNDLQFEEAA1560
 1561 LKLKELCSAL ALST

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