YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119865736, gi...
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEKYIKSKA AIAWGPNQPL SIEEIDVMLP KKGEVLVKII ASGVCHTDAF TLSGEDPEGI  60
   61 FPCVLGHEGG GIVEQIGEGV TSVKLGDHVI PLYTPECGEC KFCLSGKTNL CQKIRETQGK 120
  121 GLMPDGTTRF YKDGQPIYHY MGCSTFSEYT VLPEISLAKV NKAAPLEEVC LLGCGVTTGM 180
  181 GAVMNTAKVE EGATVAIFGL GGIGLSAVIG ATMAKASRII AIDINESKFE LAKKLGATDC 240
  241 INPKDFDKAI QDVIVEMTDG GVDYSFECIG NVDVMRSALE CCHKGWGESI IIGVAGAGKE 300
  301 ISTRPFQLVT GRVWKGSAFG GVKGRTELPD YVERYLQGEF KLSDFITHTM PLEDVNEAFE 360
  361 LMHKGESIRS VIHFAK

Type	Start	End	Confidence
Cytoplasmic	1	168	0.67
Transmembrane Helix	169	184	0.57
Non-Cytoplasmic	185	192	0.70
Transmembrane Helix	193	214	0.70
Cytoplasmic	215	376	0.65