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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|99036115
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.40
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISKRSLLLI LCLAITGCNM DCVEPGLQSR NTSVNVDVPV HKAGEEVKIH WVDSGQVISK  60
   61 GEEIKFTLDG SVNFCPFKED KNPRKVLVPA SFCADGSEPN YSKAANINDV PNNYGVDEKG 120
  121 VNKNELCGGK GFGSNRRYVD TGIKVNPGDK LSFSLVPRKI TIDYDNPGGK GISFDDNCYR 180
  181 AEEGGEKVSE SEILNVSKQE GEEFFCEGKD GKRNKIKFLP LDKTKAKESK VLVGNGYTPY 240
  241 DNKVHFNKGY VKNNEPWIHG SLFDLRRAKI GLNELCDGKN CSLDEKKKYS SYELNCYYQN 300
  301 TCYTRKGIWS YDSGRAGERN CVSSIRYKKY DKGNKCDMYS YLEKMEGNVK AGSFTEDDKS 360
  361 WAEALVAKIG DLGDQDTDKG MQCLPDNEVG ARKDNVCSQI SDNFEDFSLK LNSDYAVNDN 420
  421 VKYGSSVMLA IADYGYYGAN RGGYHVKVTR SCEYINGEKL YVYLGDNPPG DPSAPKTNDF 480
  481 KKVEHLDKTK DKVYYIIDGG LLTDECKDKK PITDECKPKK IYFGINVSNV EKDDITDKNG 540
  541 KYYENNKYSV TLFVKRKIND FISSNVNGVF KFIKEEVIGD SVKDSYKGYA RGLLQGVRAL 600
  601 LTLYVIFTVI GYMLGTIQLS KFDFIVRMFK IAFIAFAFSD RSWELFGTTL SRLFIDGSTY 660
  661 LVDSFSGYIG EGGRKFAFLD LTAGVLFTAE TWLKFLSLML SGPFGFIAFL AILYATFMFL 720
  721 KCIISATFKY VISTVLVAFL LSLTPLFIVF ILFQKTKPLF DNWIKTLAHV SLEPVILFSF 780
  781 LSLLNQLMYS VLYNLTNFSA CYQCLISVNF LSYDLCLMKS ILPLGYSPGT SVDVALSTGE 840
  841 RAGGHFAALP IDLIQAFIYL IIAGAMEAFV SISETMVQTL FSSGYGVTGG VGTVAKSASQ 900
  901 AMLSTVGLDD KTQSMIQSIK QKMSKDRGKI EAKLPNTPKQ PDKKEDSKGS SDKTTSDRPK 960
  961 TLKQSDQQKN SDETIRSDPS AKAKNKEENG EE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle