YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|95928904, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLNTSSLNL PNMLTLGRIA CVPVVMLLLL SDSRTMGFWA AVVFSIAAIT DWLDGYLARK  60
   61 WQLVTVMGKF LDPLADKLIV MAALIMMIPL GRVPAWAVFL IIAREVTVTG LRSIASSEGI 120
  121 VIAASNLGKY KTIFQMVAII ALLLHYDYYW FFGLQWEIFH VDMQFVGSFF FYVSFIMAMW 180
  181 SGGDYLYKFY NVLAGTQD

Type	Start	End	Confidence
Cytoplasmic	1	9	0.80
Transmembrane Helix	10	30	0.84
Non-Cytoplasmic	31	36	0.65
Transmembrane Helix	37	57	0.88
Cytoplasmic	58	77	0.65
Transmembrane Helix	78	100	0.82
Non-Cytoplasmic	101	107	0.46
Transmembrane Helix	108	122	0.34
Cytoplasmic	123	131	0.42
Transmembrane Helix	132	151	0.87
Non-Cytoplasmic	152	162	0.50
Transmembrane Helix	163	187	0.78
Cytoplasmic	188	198	0.57