YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114197808, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.52
Transmembrane Helix	21	41	0.85
Non-Cytoplasmic	42	59	0.48
Transmembrane Helix	60	94	0.68
Cytoplasmic	95	134	0.83
Transmembrane Helix	135	158	0.84
Non-Cytoplasmic	159	171	0.77
Transmembrane Helix	172	193	0.85
Cytoplasmic	194	210	0.88
Transmembrane Helix	211	230	0.70
Non-Cytoplasmic	231	241	0.66
Transmembrane Helix	242	262	0.70
Cytoplasmic	263	267	0.46
Transmembrane Helix	268	287	0.62
Non-Cytoplasmic	288	311	0.87
Transmembrane Helix	312	331	0.89
Cytoplasmic	332	350	0.88
Transmembrane Helix	351	373	0.89
Non-Cytoplasmic	374	391	0.88
Transmembrane Helix	392	414	0.83
Cytoplasmic	415	440	0.89
Transmembrane Helix	441	463	0.85
Non-Cytoplasmic	464	469	0.78
Transmembrane Helix	470	491	0.91
Cytoplasmic	492	500	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPSYKARKE AFVSNLAGGS ILEINAVTLV APASVLLWSV LQARLSFFTP YSPPALVVDF  60
   61 LLNVLAILFA TTLYSSAPWT LNLLLVSPAL LLLLNSKPAR TQHKAKPPRQ PTAADQNASH 120
  121 PASGSDQSLP IHPFLTTYRA AMMIVTCIAI LAVDFRVFPR RFAKVENWGT SLMDLGVGSF 180
  181 VFSSGVVSAR SILKGRQNQA VRTSLLLRLK ASTRHSIPLL VLGLIRLYSV KGLDYAEHVT 240
  241 EYGVHWNFFF TLGLLPPFVE IFDALATLIP SYEALALGIS VLYQIALEST DLKSYILVSP 300
  301 RGPDLLSKNR EGVFSFLGYL AIFLAGRAVG IRVIPRGTSP TKSASQARKS VLLSLGVQTA 360
  361 AWTALFALNS TYALGYGANI PVSRRLANMP YVLWVSAFNN AQLFLFCLLE TLFFPSVHRA 420
  421 PSKDGETDRV SFATSRIMTA FNKNGLAIFL VANLLTGAVN LSIPTLDVGA AQATGILIGY 480
  481 AAVLSGVALG LDKANIKLVL