YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115491903, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQDVRNSRL PPPELGPVLD ERLIETPYAA DGASYHSHNG QNSESRSWEP LRNGTLEPSS  60
   61 SNTRTPDGSV SHEDNETYHG LTGKRLRTLP AWIKSVEYPE DEAESSVTSR LLPSQPDEAV 120
  121 VAQHNHSPYA TSRPKPESLS REGLDGDHEA AAGRESRWKN FSKSIAYPRE PGAEEKLVTP 180
  181 EWLNENHGDY SQPWRGQLEE WEQEDTEDPM RMKKRRQIWF KRFHNTLLKS PMVPLIFRLT 240
  241 GPSALMAIIV DAVALVYLVY ITWDEYTSKP LGLRSPSAKA RLVLLDIFFI VFDSANLSLA 300
  301 FESLSTVSGA CTVGEINQEI APKNDAICDR QKALACVLLI ALLAWLTTFS ISVLRLVERV 360
  361 AQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	240	0.54
Transmembrane Helix	241	261	0.89
Cytoplasmic	262	281	0.72
Transmembrane Helix	282	301	0.74
Non-Cytoplasmic	302	332	0.73
Transmembrane Helix	333	357	0.83
Cytoplasmic	358	362	0.74