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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115491809, gi...
Protein type: Transmembrane
Type Confidence: 0.93
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPAETASSP PFSVLEPIVV DDQMENPYQD SNLDFLDSAR LQMSSENAGR DFDDLFAHST  60
   61 SSRTVTESGS VCLSPSELSV KRPYQEQDVL RQPNLVKSDS PAESPEASSR SSSSESPRNH 120
  121 NRNPSVASST SAVHSENTMM PFGYTSEDWI NPDLATVKEE MMFGFDPSLP SMETDTPFTA 180
  181 ETDLESSNKA MDAAFDFESA ASSPSPLRTG TTPQPMPQKM ADSQFRSASN SAAKHSTSPQ 240
  241 MPKNGSPYFT NVKESSPFAM SRGVGSQGRS TNHWAGKSPS SLLEESFGGI DMNGGSPLNS 300
  301 TYNFGVNGVP FGLNFAPSPQ SNIKAESPQR HVLTVHPTSL KSRVETQIPI RLTLYPLPAG 360
  361 VRKVRLPSHT ISKPKFLAPP SAERAPDTVE LHTSLVCTSA MQDQTKLKKA FARARGDLHP 420
  421 TETSQDDDKP SEGGEVKICA GCIQRERKRA FRKKQRKPEE DELFQKDEEK RVIVFNTNEI 480
  481 KEWAEPSKNA VPGYGDVSIP NIPAGAMQVE LPMRIACYCR HQNEKLGFQV IFTVKDYQDN 540
  541 VIAQAITNSI MITDDHKTHA PPAPPAPGPS PSLPDGTQLP GVGVFPSAVN SDTNKSSQSP 600
  601 SATDLQGLQQ RFNSQYQMTS PSFSVNQNSA NGVPSSSSQT PRSLSRQASP NDFQGPMSKR 660
  661 RKHSNSGRLP SELTMTKLES SQSSGGLSNS LGNDSPFSAP RGFASPVERP FVTANALSNQ 720
  721 FTNGPPTPNS GDNNPFFNPT PQAQSLDTFI QQQLMSAPGS AQPSRPGTPG GSSRNNFQDQ 780
  781 NLNLSLGPTP TTPMWPPLTN AGNRLPSVIH KLVPAEGSVT GGTEVTLLGS GFYPGMEVVF 840
  841 GDTLATTTTF WGDKCLNCLT PPALQPGLVA VVFKHEHPTF GQLQPAQPLM PKQQQFFRYV 900
  901 DDRELQMYRL ALGILGQKLG SQADAFQTAQ QIMGSDPKSI FGLQKDFQGG SNGGHQRQVP 960
  961 GLEQQGKMSD LDSKMLTYLE FIDLDDNPRP PKYNSRSATG QTLLHFASSL GLTRFVAGLL1020
 1021 ARGANPDVQD NTGNTPMHLA ALNGHAHIVH RLRLAGANVN ARSIRGFTPA DLATTLPAHQ1080
 1081 AALIPARHYR SRSVGSLTSS RRRHSSSASL HSLWESSSGS FDNAIDDSSE DEDDEDELVF1140
 1141 TVSRRSSIHQ DAAAALPAAE SSAPGDARAF SPPAALVAWR NQLQAQINQF QQSVANAFPN1200
 1201 LPALPPMPAL PDYQAHPMMR RITNLVPHRP TTSWSAKEGW WDMLTGNSAP NTTELPSYEE1260
 1261 LYPRGEGGDE EEAARMKKSS TLQAATDAML DQHFEAQASS QAGSSRTAPP KQEKEDLRDI1320
 1321 RIGRKVISRE QQKHLREQQA RRMKGLASDR NLYFIWIPLL LLVICAWIRS YAPGIWQGFS1380
 1381 KGYEFAKARY AQRAIATGA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle