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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115491729, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQRGSFFFL LLVFYLLLSS QSHAPLIVQD QEHQRELARE RNALRMLNES KYGDFDPGAD  60
   61 RWLPFPGTRK NDSYAWSLLS DVHERVRYQL HSAITGVGLV PPPALGDPEA SPALNLSQLL 120
  121 LPVYRNATGK LRGDWVRRRI DKEIPPLNTT AIMLENEYFT REFSQNITGN EGTFYLDLRE 180
  181 GGGEELRLRS GHVREMRATL AVESGDLWGN TWYIPLYGVH FPESGGIVLS TTSEKFGGVF 240
  241 SLPHLTLTRD SHDLAHQLLV KSLSDTVSEK RNRPPTLFPW SSLVGTEQVE FPAPKCEHIV 300
  301 YLQQHPVAVN DYLADRQVID QIEQELRYPI GAPIPAPPLM VMSATVFSPD CGYILESKGT 360
  361 PDYPPSEGLH LVGPKLEEFG KFSARVIFLV CGVFVAQIAL LLRQIKEACT PSTRSRISFY 420
  421 TIALMAFGDA FVLVFLLLEL YPAVSFLIMA TASFLTFLSV SYIGMKFMME IWAVQAPERR 480
  481 EQDRRTNPAT ARPETLPLPA TAARLRDTGA TPIILTPDQD PPAEEMEPTP PRNTTPTAGE 540
  541 TRNDVGAMYA RFYFILFVML IVSIWSFLWP NRMGAIYART LGFIYLSFWT PQIYRNVMRN 600
  601 CRKALRWDFV VGQSFLRLFP FIYFLTVPGN VLFIRPDMTT ALAFAGWVWI QVWVLASQDI 660
  661 LGPRFFIPRG WAPPAYDYHP IVRDTTGSGE DLESGGVLPI GALRADERDA STDGKDEDKS 720
  721 RPNQRKKAVF DCAICMQEIE VPVLSAPGAA GGSSVADGAS SILSRRMYMV TPCRHIFHST 780
  781 CLESWMRLRL QCPICRESIP PV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle