YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115491671, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQIRGTAGY NLGHQNPFGG PGRADATNDP SPLDAIREQT SKIEDWLDTM SDPVKPYLPA  60
   61 IGRFLIVVTF IEDSLRMITQ WSDQLLYLSD YRKIPWGITH TFLIVNIIAM SICSFLVIAR 120
  121 KHTEIAVAGL LGVVVTQGLG YGLIFDLNFF LRNLSVVGGL LMVLSDSWVR KKFVPAGLPQ 180
  181 LDEKDRKMYV QFAGRVLLIF LFLGFIMTGQ WSLWRVIVSL FGLVACVMVV VGFKAKWSAI 240
  241 MLVVLLSVFN VLVNNFWTLH PHHPHKDFAK YDFFQILSIV GGLLLLVNMG PGQLSMDEKK 300
  301 KVY

Type	Start	End	Confidence
Cytoplasmic	1	59	0.77
Transmembrane Helix	60	78	0.63
Non-Cytoplasmic	79	95	0.83
Transmembrane Helix	96	118	0.91
Cytoplasmic	119	124	0.79
Transmembrane Helix	125	145	0.87
Non-Cytoplasmic	146	149	0.79
Transmembrane Helix	150	169	0.88
Cytoplasmic	170	187	0.95
Transmembrane Helix	188	207	0.91
Non-Cytoplasmic	208	212	0.73
Transmembrane Helix	213	233	0.91
Cytoplasmic	234	239	0.78
Transmembrane Helix	240	259	0.94
Non-Cytoplasmic	260	272	0.81
Transmembrane Helix	273	292	0.92
Cytoplasmic	293	303	0.87