YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114197236, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.98
Transmembrane Helix	33	56	0.91
Cytoplasmic	57	63	0.88
Transmembrane Helix	64	84	0.93
Non-Cytoplasmic	85	122	0.94
Transmembrane Helix	123	144	0.92
Cytoplasmic	145	152	0.78
Transmembrane Helix	153	173	0.89
Non-Cytoplasmic	174	186	0.84
Transmembrane Helix	187	208	0.89
Cytoplasmic	209	224	0.91
Transmembrane Helix	225	244	0.91
Non-Cytoplasmic	245	254	0.72
Transmembrane Helix	255	276	0.95
Cytoplasmic	277	283	0.92
Transmembrane Helix	284	303	0.92
Non-Cytoplasmic	304	309	0.69
Transmembrane Helix	310	329	0.91
Cytoplasmic	330	340	0.87
Transmembrane Helix	341	361	0.93
Non-Cytoplasmic	362	393	0.84
Transmembrane Helix	394	413	0.91
Cytoplasmic	414	479	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATYPVPYNG SATGTGGDSL TEDLNIYYSS GDIAWVITST ALVLLMIPGV GFFYSGLARR  60
   61 KSALSLIWLS IMSVGMVSFQ WFFWGYSLAF SHTAGSYIGD LANFGFKGVL AAPSVGSTKV 120
  121 PDLLFAVFQG MFACITVALA VGAVAERGRM LPCMVFVFIW STIIYDPIAC WTWNASGWVY 180
  181 KLGGLDFAGG TPVHIASGAT ALAYSLMLGK RRGHGTHELN YRPHNVTHVV IGTVFLWVGW 240
  241 FGFNAGSALS ANLRAVMAAV VTNLAASVGG VTWCLLDYRL ERKWSTVGFC SGVIAGLVAI 300
  301 TPGSGFVTPW AAFIFGVVGA TACNYATKLK YVMRVDDALD IFAVHGIGGL VGNLLTGLFA 360
  361 ADYIAHLDGA TTISGGWINH HYIQLGYQLA DSVTGMAYSF FGSCIILFLI NLIPGLRLRA 420
  421 PEEDEIMGID DAEIGEFAYD YVEITRDVIS TANSEVGENA SKRSITPPAG NHTAVEAKV