YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115491463, gi...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAPFIRTVS TTTTLCLRPR PINPRSAPFT SVSRSLNRSS KPYSTDAPSI PSQTSNPRSR  60
   61 LGRFLGFTSI AVLAFTAGLV YQTSKTVSRM MTVTLPTDEE TLTAFAPPDE FSQTVDEYIR 120
  121 NHPLTVSLRE NPAFTESRPH LKIPEALRAR NLTAGTLAGP EKIVVPPYIF SEEGGKSLVS 180
  181 IFYLGPSVCG HPGIVHGGLL ATLLDEAMGR CCFPALPNKV GVTANLNIDY RRPAMAENYV 240
  241 VLRAETVKVE GRKAWVEARI ETLPEDGKEP QVLVEAKSLF VEPKQAAAMS SLYKITN

Type	Start	End	Confidence
Cytoplasmic	1	60	0.88
Transmembrane Helix	61	81	0.88
Non-Cytoplasmic	82	297	0.91