YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115491363, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSAARRRIL DGLNRRYIYG RFPLLHSIIF LIEMAAAMRL AAKFNSYYAE KPVLTTMVTN  60
   61 AILGGIADTV AQLITAFKAR PSRHGTGGDD FISIEIHDLD KEKPPALGEL GHARNLPPPF 120
  121 DFERLTRFMS YGFFMAPVQF QWFGFLSRTF PLTKKNPTIP ALKRVAVDQL MFAPFGLVCF 180
  181 FTFMTIAEGG GRRALTRKFQ DVYLPTLKAN FVLWPAVQIL NFRVVPIQFQ IPFVSSVGIA 240
  241 WTAYLSLTNS SEEE

Type	Start	End	Confidence
Cytoplasmic	1	16	0.99
Transmembrane Helix	17	38	0.90
Non-Cytoplasmic	39	52	0.84
Transmembrane Helix	53	76	0.79
Cytoplasmic	77	127	0.87
Transmembrane Helix	128	146	0.83
Non-Cytoplasmic	147	169	0.73
Transmembrane Helix	170	190	0.88
Cytoplasmic	191	223	0.64
Transmembrane Helix	224	245	0.59
Non-Cytoplasmic	246	254	0.44