YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115385126, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	90	0.98
Transmembrane Helix	91	112	0.89
Non-Cytoplasmic	113	119	0.73
Transmembrane Helix	120	141	0.82
Cytoplasmic	142	157	0.87
Transmembrane Helix	158	176	0.94
Non-Cytoplasmic	177	195	0.86
Transmembrane Helix	196	219	0.84
Cytoplasmic	220	229	0.80
Transmembrane Helix	230	252	0.83
Non-Cytoplasmic	253	273	0.87
Transmembrane Helix	274	295	0.89
Cytoplasmic	296	387	0.70
Transmembrane Helix	388	413	0.82
Non-Cytoplasmic	414	423	0.73
Transmembrane Helix	424	445	0.86
Cytoplasmic	446	453	0.75
Transmembrane Helix	454	477	0.82
Non-Cytoplasmic	478	534	0.94
Transmembrane Helix	535	559	0.84
Cytoplasmic	560	577	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNKARTVSK RRSKPALSVT TGQNGHARVE MNSNIEMRKR DTSSESSGTR ASRYMSHSSF  60
   61 SLDQDPPLTP QTPAMSTTSF ANLPATDRRN FLLLCVLYFL QGVPMGLATG SVPFLLKPYL 120
  121 SYGQIGVFSL ASYPYSLKLL WSPIVDAVWS RRFGRRKSWI TPVQVIAGLA MIYMGGKIED 180
  181 MMKQAGANGG AGVWDFTCWW FLLVFFCATQ DIAVDGWAIT LMSPPNISYA STAQTVGLTA 240
  241 GHFLSYTVFL AFNSADFANR YFRTTPAEGG LLSLGTYLTF WGWAYLIVTT ALAVLKKEDR 300
  301 SQERDSILDV YKSMWSVLKL KNIQTIILVH LIAKIGFQAN DGVTSLKLLD KGFGQDNMAL 360
  361 VVLIDFPFEI GLGYYAGKWS TEYTPMRLWC WAFVGRLIAA VLAQATVMVF PAAAEVPFWY 420
  421 LLMVIGEHLI STFMNTVMFV AVSAFHARIA DPAIGGTYMT MLATVSNLGG TFPRYFILKL 480
  481 VDMFTEATCM PPSVAPPADQ LKGDLVTTSF SCALEPDKAR CVNGGGTCHT IHDGYYTTNV 540
  541 LCVLVGVVTF IFFIKPAVLK LQGLPLRAWR LYPNSRN