YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115385076, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.79
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLRPATPLT ILLLIAFVLL LLSVISTPIV KGIPLATFKN VDYGVFGYCK NDKCTNIHVG  60
   61 YTNDDMTSTG SSSDFNLPST TRVSLSSILI VHPVAALLTL ICLCMAIAAH FHGPSHSPRY 120
  121 LLALLILLLP TLLVTLLAFL VDILLFVPHL GWGGWIVLAA TIIHVSCGVV TCAMRRTLVS 180
  181 RKARKKRIAE NAEMSGENFY NRQNAAAAAA AVNEPKAFQM ETKDSFVTPP GSDNGPTFAT 240
  241 FRTNTRESDD DRTPLNSRTP ANDAEHQFQV REDAPYQRED TLPPGPYGPG PGPRMRPGPN 300
  301 DPRLHNQYSD PNMGSRRGPP PPGFNSRGRG GYPPRGGYGR GGPYAGPRGP PPAGVRGAPM 360
  361 GPMRGGHPGM MGRGGYRGPP TLGYGPGSRP MPPPEEAAYD YHGPPNGQMR QPSPGPIGMA 420
  421 VSADAGPIGQ AIEMTPQPRR TGSTEPQMQD SLEPQPHAVS ADGYAEPVSP SSLYSRTPYD 480
  481 MSQVPSSSVP LTESRSYVPP RAGWGADLRV GPSPSPVHAY GARSMNRSPQ THVRSNSGDY 540
  541 YEDNDPRFAN RNESAVGNPR LPTALTPGNN AI

Type	Start	End	Confidence
Signal Peptide	1	26	0.79
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	88	0.94
Transmembrane Helix	89	111	0.93
Cytoplasmic	112	120	0.86
Transmembrane Helix	121	144	0.90
Non-Cytoplasmic	145	154	0.75
Transmembrane Helix	155	178	0.89
Cytoplasmic	179	572	0.98