YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114196770, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGPSIQDRT VEFRAILGQA QKRLGSSKVG SQRQALLSDA QRKQANGADQ GPRRRSEFAR  60
   61 RAAEIGRGIT ATTAKLQRLA ELAKRKTLFD DRPVEISELT YVIKQDLASL NQQIAGLQQL 120
  121 TLSQHPKSSR SKADQEGEHN DNVVVMLQGK LADVGANFKE VLEVRTKNIQ ASRSRTENFV 180
  181 SSVSSKSQSA LDPQRSDSPL YNPSGRRTPQ PGGSSDLLTL DPSNPSPLGQ SAMHSDQQLL 240
  241 MMEEAQNSNS YIQARGEAID AIERTISELG GIFGQLAQMV NEQTEMIQRI DANTEDVVDN 300
  301 VQGAHRELLK YWTRVSGNRW LIAKMFGVLM IFFLLWVLIS G

Type	Start	End	Confidence
Cytoplasmic	1	319	0.87
Transmembrane Helix	320	339	0.97
Non-Cytoplasmic	340	341	0.71