YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115384928, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILMFGRFL SRSLPHHRDG PTIFSFQQKL IMEGGGPSST AGASPVLEPV VNDELSDAED  60
   61 LAADNFYSPP ATPGLSRTPS FSYQDDWDTF PSLDHFTVFD LLDNLALSQR LEKLQRTINL 120
  121 QKDKVKQQRE KLKSSSVNAK NRVVGEWKKR VPTADEQLDK YRRRMKHGVE RLGKQWNATA 180
  181 TVTLREKISF IAGVLNIFVS GYLIGGHPEY FYIWFSVQLL YFMPIRYYRY HKKGYHYFLA 240
  241 DLCYFVNMLC MLSIWVFPQS ARLFISTFCL TFGNNAVAIA MWRNSMVFHS MDKVVSLFIH 300
  301 IMPPATLHCL VHLTSAEILK ERFPAIYAIK FSEPGSPNHF SLLAMMGWAT LPYVIWQSAY 360
  361 HCFITVRRAE KIAAGRPTSF TWLRKSYAKT WIGKLVLNLP ESLQSPAFMV IQYLYALLTM 420
  421 IPCPLWFWSR WASGLFLTAL FILSIHNGAT YYIDIFGNRF QKELEELKRD VARWQSSPEG 480
  481 SMSPTTLGGS DSAAAVGAQV LDDSAGTSKN NGGSDQASLD RIPPLDSEAA TTGAQDANNR 540
  541 SEPAVLRERR

Type	Start	End	Confidence
Cytoplasmic	1	187	0.94
Transmembrane Helix	188	205	0.89
Non-Cytoplasmic	206	209	0.74
Transmembrane Helix	210	228	0.76
Cytoplasmic	229	236	0.66
Transmembrane Helix	237	257	0.93
Non-Cytoplasmic	258	262	0.71
Transmembrane Helix	263	282	0.92
Cytoplasmic	283	293	0.67
Transmembrane Helix	294	316	0.77
Non-Cytoplasmic	317	339	0.74
Transmembrane Helix	340	364	0.75
Cytoplasmic	365	407	0.70
Transmembrane Helix	408	428	0.75
Non-Cytoplasmic	429	433	0.52
Transmembrane Helix	434	453	0.86
Cytoplasmic	454	550	0.74